Basic Evolutionary Genomics, Summer 2018

09.04.2018 - 04.05.2018
Mon-Fri, 12:00 - 13:30
Room B01.027
LMU Biozentrum (Grosshaderner Str. 2, Planegg-Martinsried)

Prof. Dr. John Parsch (parsch@bio.lmu.de)


Course Materials (.pdf files)

General
Course Announcement
Course Schedule
 


Week 1
Summaries: Basic Genomics    H. influenzae Genome    Drosophila Genome
Exercises: Ensemble Bacteria    FlyBase    Shotgun Sequencing    ShotgunSimulator.R
Readings: Microbial Genome Sequencing    Drosophila Genome Sequencing

Week 2
Summaries: Human Genome    Transcriptomics    Forward and Reverse Genetics
Exercises: Human Genome Fight
Readings: Human Genome Impact    IHGP 2002    Celera 2002    IHGP2003    Celera 2003    Genome Engineering

Week 3
Summaries: Interactomics/Proteomics    NextGen 1    NextGen 2
Exercises: SAGE    BioGRID
Readings: Genetic Landscape    NextGen Impact    NextGen Comparison    NanoPore Sequencing
 

FINAL EXAM: May 4, 2018 at 12:00 in room B01.027
 
A make-up exam will be offerred on June 11, 2018 at 12:00 in B01.027.
You must register with Prof. Parsch by email by June 1 to participate.
Students may only take the make-up exam if it is allowed by the rules
of their study program (Studienordnung).
 
Suggested Text
Gibson and Muse. 2008. A Primer of Genome Science. 3rd Ed. Sinauer.
 



Advanced Evolutionary Genomics, Summer 2018

04.06.2018 - 22.06.2018
Mon-Fri, 12:00 - 13:30
Room B01.027
LMU Biozentrum (Grosshaderner Str. 2, Planegg-Martinsried)

Prof. Dr. John Parsch (parsch@bio.lmu.de)

 

Make-up Exam Results

 


Course Materials (.pdf files)

General
Course Announcement
Course Schedule


Week 1
Summaries: Comparative Genomics I    Minimal Genome    Comparative Genomics II    Human vs. Chimp
Exercises: BLAST    GO    EurOverexpressed.txt    PosHum.txt
Readings: Minimal Genome    Synthetic Genome    Minimal Genome Synthesis

Week 2
Summaries: Genome Size    Gene and Genome Duplication    Isochores    Sex-Biased Genes
Exercises: Sebida
Readings: Laupala Paper    Podisma Paper    Junk DNA    Sex Bias Review    Sex Bias Progress    Sex Bias Review 2

Week 3
Summaries: Evolution of Gene Expression    Evolutionary Functional Genomics
Exercises: PAL2NAL    Alignments.txt
Readings: MtnA adaptation    CG9509 adaptation  

FINAL EXAM: June 22, 2018 at 12:00 in room B01.027
 
A make-up exam will be offerred on July 17, 2018 at 12:00 in B01.027.
You must register with Prof. Parsch by email by July 10 to participate.
Students may only take the make-up exam if it is allowed by the rules
of their study program (Studienordnung).
 
Suggested Text
Gibson and Muse. 2008. A Primer of Genome Science. 3rd Ed. Sinauer. (or 2nd edition, 2004)
Graur. 2016. Molecular and Genome Evolution. Sinauer.
Pagel and Pomiankowski. 2007. Evolutionary Genomics and Proteomics. Sinauer.