Basic Evolutionary Genomics, SS 2016

11.04.2016 - 06.05.2016
Mon-Fri, 12:00 - 13:30 s.t.
Kleiner Hoersaal II (B01.027)
LMU Biozentrum (Grosshaderner Str. 2, Planegg-Martinsried)

Prof. Dr. John Parsch (parsch@bio.lmu.de)


Course Materials (.pdf files)

General
Course Announcement
Course Schedule
 
Week 1
Summaries: Basic Genomics    H. influenzae Genome    Drosophila Genome
Exercises: Ensemble Bacteria    FlyBase    Shotgun Sequencing    ShotgunSimulator.R
Readings: Bacteria 1    Bacteria 2    Fly Meets Shotgun

Week 2
Summaries: Human Genome    Transcriptomics    Forward and Reverse Genetics
Exercises: Human Genome Fight    SAGE
Readings: Lander Review 2011    IHGP 2002    Celera 2002    IHGP2003    Celera 2003

Week 3
Summaries: Interactomics/Proteomics    Next Gen 1
Exercises: BioGRID
Readings: Genome Engineering    Genetic Landscape    NextGen1    NextGen2

Week 4
Summaries: Next Gen 2
Exercises:
Readings: NextGen Comparison    NanoPore Sequencing 2012    NanoPore Sequencing 2014    NanoPore Sequencing 2016

 
FINAL EXAM: May 4, 2016 at 12:00 in room B01.027
 
A make-up exam will be offerred on June 13, 2016 at 12:00 in B01.027.
You must register with Prof. Parsch by email by June 6 to participate.
Students may only take the make-up exam if it is allowed by the rules
of their study program (Studienordnung).
 
Suggested Text
Gibson and Muse. 2008. A Primer of Genome Science. 3rd Ed. Sinauer.
(or 2nd edition, 2004)

 



Advanced Evolutionary Genomics, SS 2016

06.06.2016 - 24.06.2016
Mon-Fri, 12:00 - 13:30
Kleiner Hoersaal II (B01.027)
LMU Biozentrum (Grosshaderner Str. 2, Planegg-Martinsried)

Prof. Dr. John Parsch (parsch@bio.lmu.de)

 
 
Course Materials (.pdf files)

General
Course Announcement
Course Schedule
 

Make-up Exam Results 2016

 

Week 1
Summaries: Comparative Genomics I    Minimal Genome    Comparative Genomics II    Human vs. Chimp
Exercises: BLAST    GO    EurOverexpressed.txt    PosHum.txt
Readings: Minimal Genome    Synthetic Genome    Minimal Genome Synthesis    Eukaryotic Comparative Genomics    GO review

Week 2
Summaries: Genome Size    Gene Duplication    Isochores
Exercises: PAL2NAL    Alignments.txt    CodonW    Male.fa    Female.fa
Readings: Laupala Paper    Podisma Paper    Junk DNA    Isochores Review    Darwinian Genomics

Week 3
Summaries: Sex-Biased Genes    Evolution of Gene Expression    Evolutionary Functional Genomics
Exercises: Sebida
Readings: Sex Bias Review    Sex Bias Progress

  
FINAL EXAM: June 24, 2016 at 12:00 in room B01.027
 
A make-up exam will be offerred on July 25, 2016 at 12:00 in B01.027.
You must register with Prof. Parsch by email by July 18 to participate.
Students may only take the make-up exam if it is allowed by the rules
of their study program (Studienordnung).
 
Suggested Texts
Gibson and Muse. 2008. A Primer of Genome Science. 3rd Ed. Sinauer. (or 2nd edition, 2004)
Graur and Li. 2000. Fundamentals of Molecular Evolution. 2nd Ed. Sinauer.
Pagel and Pomiankowski. 2007. Evolutionary Genomics and Proteomics. Sinauer.